STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1642Probable transmembrane protein. (540 aa)    
Predicted Functional Partners:
RSp1641
Probable transmembrane protein.
  
  
 0.804
copC
Probable copper resistance c signal peptide protein.
 
    0.759
RSp1640
Probable lipoprotein transmembrane.
       0.741
RSp0414
Probable ferric siderophore receptor protein.
 
  
 0.649
RSc2920
Putative hydroxamate-type ferrisiderophore receptor signal peptide protein.
 
  
 0.634
prhA
Outer membrane receptor prha signal peptide protein.
 
  
 0.501
RSc2729
Putative ferrichrome-iron receptor protein.
 
   
 0.498
RSp0100
Putative ferrisiderophore receptor protein.
 
   
 0.495
RSc0800
Putative ferrisiderophore receptor signal peptide protein.
 
  
 0.492
RSp0416
Probable ferric siderophore receptor outer membrane signal peptide protein.
 
   
 0.485
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.