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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1645Putative 4-oxalocrotonate tautomerase protein. (140 aa)    
Predicted Functional Partners:
RSp0892
Putative hydratase/decarboxylase; protein.
    
 0.908
dmpC
2-hydroxymuconic semialdehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
    
 0.901
RSc0807
Putative tautomerase (4-oxalocrotonate tautomerase) protein.
     
  0.900
dmpI
Probable tautomerase protein; Belongs to the 4-oxalocrotonate tautomerase family.
     
  0.900
RSp1151
Putative 4-oxalocrotonate tautomerase homolog protein.
     
  0.900
RSp1644
Probable transcription regulator transcription regulator protein.
     0.817
RSp1646
Putative signal peptide protein.
       0.709
xylF
Probable d-xylose-binding periplasmic abc transporter protein.
      
 0.654
hemL
Probable glutamate-1-semialdehyde 2,1-aminomutase protein.
      
 0.643
RSc1504
Probable universal stress protein (usp).
   
  
 0.527
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.