STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1650Probable cog5662, predicted transmembrane transcriptional regulator (anti-sigma factor) transcription regulator protein. (276 aa)    
Predicted Functional Partners:
RSp1651
Probable rna polymerase sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.981
RSp1652
Putative metallophosphoesterase/phosphohydrolase protein.
 
     0.880
RSc2431
Putative chloride channel transmembrane protein.
  
     0.716
acpA
Putative acid phosphatase protein.
  
     0.627
RSc3391
NitT/TauT family transport system substrate-binding protein; Probable cog0715, abc-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component abc transporter protein.
  
     0.611
RSc3315
Putative transmembrane protein.
  
     0.599
RSp1476
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.586
RSc2430
Putative transcription regulator protein.
  
     0.582
RSp1653
Putative cytochrome c oxidase subunit II oxidoreductase protein.
       0.544
adc
Probable acetoacetate decarboxylase (adc) (aad) protein; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
  
     0.524
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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