Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mgpAMgpa-like protein; COG0618; expression validated by proteogenomic mapping: 8 unique peptides covering 31.9% of sequence. (329 aa)    
Predicted Functional Partners:
rbfA
Ribosome-binding factor a; COG0858; expression validated by proteogenomic mapping: 7 unique peptides covering 43.8% of sequence.
  
    0.666
glpF
Glycerol uptake facilitator protein; COG0580; expression validated by proteogenomic mapping: 1 unique peptides covering 4.3% of sequence; Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.618
nemA
NADH:flavin oxidoreductases; Old yellow enzyme family; COG1902; expression validated by proteogenomic mapping: 37 unique peptides covering 77.1% of sequence.
       0.570
polA
DNA polymerase I; COG0258; expression validated by proteogenomic mapping: 13 unique peptides covering 33.9% of sequence.
  
  
 0.487
MMOB1700
Conserved expressed protein; Unknown function; putative protein prenyltransferase; COG1284; expression validated by proteogenomic mapping: 4 unique peptides covering 8.2% of sequence.
 
     0.468
rpsD
30s ribosomal protein s4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.430
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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