Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ydnaBPutative dnaB-like protein; COG3611; expression validated by proteogenomic mapping: 1 unique peptides covering 2.8% of sequence. (351 aa)    
Predicted Functional Partners:
MMOB1860
Expressed protein; Expression validated by proteogenomic mapping: 2 unique peptides covering 8.4% of sequence.
       0.773
gapA
Glyceraldehyde 3-phosphate dehydrogenase; COG0057; expression validated by proteogenomic mapping: 74 unique peptides covering 96.5% of sequence; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.600
uvrA
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.481
comEA
Competance locus protein ComEA; COG1555; expression not validated.
  
     0.476
trxB
Thioredoxin reductase; COG0492; expression validated by proteogenomic mapping: 51 unique peptides covering 78.5% of sequence.
       0.425
ptsK
Hpr kinase; COG1493; expression validated by proteogenomic mapping: 15 unique peptides covering 48.4% of sequence; Belongs to the HPrK/P family.
       0.422
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.422
dnaE-2
DNA polymerase III alpha subunit; COG0587; expression validated by proteogenomic mapping: 15 unique peptides covering 21.4% of sequence.
     
 0.401
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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