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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prfAPeptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (358 aa)    
Predicted Functional Partners:
hemK
Protoporphyrinogen oxidase; COG2890; expression validated by proteogenomic mapping: 2 unique peptides covering 5.5% of sequence.
 
 
 0.998
rplI
50S ribosomal protein l9; Binds to the 23S rRNA.
  
 
 0.987
rplC
50S ribosomal protein l3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.985
rplQ
50S ribosomal protein l17; COG0203; expression validated by proteogenomic mapping: 8 unique peptides covering 47.5% of sequence.
  
 
 0.985
rpmA
50S ribosomal protein l27; COG0211; expression validated by proteogenomic mapping: 9 unique peptides covering 57.6% of sequence; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.985
rpsL
30S ribosomal protein s12; With S4 and S5 plays an important role in translational accuracy.
  
 
 0.985
rpsG
30S ribosomal protein s7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.984
rplT
50S ribosomal protein l20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.984
rpmF
50S ribosomal protein l32; COG0333; expression validated by proteogenomic mapping: 2 unique peptides covering 31.3% of sequence; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.983
rplS
50S ribosomal protein l19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.983
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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