Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pepFOligoendopeptidase f; COG1164; expression validated by proteogenomic mapping: 36 unique peptides covering 49.8% of sequence. (609 aa)    
Predicted Functional Partners:
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.762
pgmB
Beta-phosphoglucomutase; COG0637; expression validated by proteogenomic mapping: 12 unique peptides covering 41.3% of sequence.
     
 0.660
malC
Maltodextrin ABC transporter permease protein; COG1175; expression validated by proteogenomic mapping: 1 unique peptides covering 3.7% of sequence.
     
 0.608
MMOB1960
Unspecified ABC transporter ATP-binding subunit; COG1131; expression validated by proteogenomic mapping: 8 unique peptides covering 22.9% of sequence.
  
    0.502
lig
NAD(+)-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.498
MMOB1970
Similar to a M. penetrans protein; expression validated by proteogenomic mapping: 1 unique peptides covering 3.4% of sequence.
       0.453
tufA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
     
 0.442
recA
Recombination protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.420
clpB
ATP-dependent Clp protease, ATPase subunit; COG0542; expression validated by proteogenomic mapping: 52 unique peptides covering 57.4% of sequence; Belongs to the ClpA/ClpB family.
  
  
 0.404
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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