STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepFOligoendopeptidase f; COG1164; expression validated by proteogenomic mapping: 36 unique peptides covering 49.8% of sequence. (609 aa)    
Predicted Functional Partners:
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.767
pgmB
Beta-phosphoglucomutase; COG0637; expression validated by proteogenomic mapping: 12 unique peptides covering 41.3% of sequence.
     
 0.584
malC
Maltodextrin ABC transporter permease protein; COG1175; expression validated by proteogenomic mapping: 1 unique peptides covering 3.7% of sequence.
     
 0.520
lig
NAD(+)-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.498
MMOB1960
Unspecified ABC transporter ATP-binding subunit; COG1131; expression validated by proteogenomic mapping: 8 unique peptides covering 22.9% of sequence.
  
    0.498
MMOB1970
Similar to a M. penetrans protein; expression validated by proteogenomic mapping: 1 unique peptides covering 3.4% of sequence.
       0.454
pepA
Leucyl aminopeptidase; COG0260; expression validated by proteogenomic mapping: 36 unique peptides covering 64.7% of sequence; Belongs to the peptidase M17 family.
     
 0.441
pepA-2
Leucyl aminopeptidase; COG0260; expression validated by proteogenomic mapping: 59 unique peptides covering 85.2% of sequence; Belongs to the peptidase M17 family.
     
 0.441
lonA
ATP-dependent Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
  
  
 0.439
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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