Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
holADNA polymerase III delta subunit; COG1466; expression validated by proteogenomic mapping: 1 unique peptides covering 3.9% of sequence. (310 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III beta chain; COG0592; expression validated by proteogenomic mapping: 18 unique peptides covering 44.2% of sequence.
 
 
 0.991
dnaX
DNA polymerase III subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.990
dnaE-2
DNA polymerase III alpha subunit; COG0587; expression validated by proteogenomic mapping: 15 unique peptides covering 21.4% of sequence.
  
 0.990
holB
DNA polymerase III subunit delta; COG0470; expression validated by proteogenomic mapping: 1 unique peptides covering 6.3% of sequence.
    
 0.989
dnaE
DNA polymerase III alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
    
 0.934
dexB
Glucan 1,6-alpha- (dextran) glucosidase; COG0366; expression validated by proteogenomic mapping: 7 unique peptides covering 19.1% of sequence.
 
     0.806
MMOB3620
Expressed protein; Expression validated by proteogenomic mapping: 24 unique peptides covering 49.5% of sequence.
       0.704
MMOB3630
Hypothetical protein; Expression validated by proteogenomic mapping: 1 unique peptides covering 3.4% of sequence.
       0.704
MMOB3640
Hypothetical protein; Expression not validated.
       0.544
nadD
Bidomainal protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
  
 0.514
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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