Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
MMOB4360Expressed protein; Expression validated by proteogenomic mapping: 4 unique peptides covering 19.3% of sequence. (223 aa)    
Predicted Functional Partners:
MMOB4380
Hypothetical endonuclease; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
       0.813
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.813
trmU
tRNA-methyltransferase (5-methylaminomethyl-2-thiouridylate); Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.800
greA
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.786
MMOB4370
Expressed protein; Expression validated by proteogenomic mapping: 3 unique peptides covering 22.5% of sequence.
       0.773
hpt
Hypoxanthine-guanine phosphoribosyltransferase; COG0634; expression validated by proteogenomic mapping: 13 unique peptides covering 52.7% of sequence; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.593
MMOB4410
Expressed protein; Expression validated by proteogenomic mapping: 78 unique peptides covering 58% of sequence.
       0.553
cbiQ
Putative cobalt ABC transporter permease protein; COG0619; expression validated by proteogenomic mapping: 2 unique peptides covering 6.9% of sequence.
       0.508
cbiO
Putative ABC transporter ATPase component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
       0.508
cbiO-2
Putative cobalt ABC transporter ATPase component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
       0.508
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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