Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
polADNA polymerase I; COG0258; expression validated by proteogenomic mapping: 13 unique peptides covering 33.9% of sequence. (295 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III beta chain; COG0592; expression validated by proteogenomic mapping: 18 unique peptides covering 44.2% of sequence.
  
 0.992
recA
Recombination protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.979
snf2
Swf/snf family helicase-like protein; COG0553; expression validated by proteogenomic mapping: 17 unique peptides covering 20.7% of sequence.
  
 0.970
ssl2
DNA or RNA helicase of superfamily II; COG1061; expression validated by proteogenomic mapping: 21 unique peptides covering 34% of sequence.
  
 0.957
holB
DNA polymerase III subunit delta; COG0470; expression validated by proteogenomic mapping: 1 unique peptides covering 6.3% of sequence.
   
 0.921
dnaE-2
DNA polymerase III alpha subunit; COG0587; expression validated by proteogenomic mapping: 15 unique peptides covering 21.4% of sequence.
  
 
 0.899
ssb
Single strand binding protein; COG0629; expression validated by proteogenomic mapping: 13 unique peptides covering 44% of sequence.
  
 0.891
glyS
glycyl-tRNA synthetase; COG0423; expression validated by proteogenomic mapping: 24 unique peptides covering 45.4% of sequence.
  
 0.887
asnS
asparaginyl-tRNA synthetase; COG0017; expression validated by proteogenomic mapping: 34 unique peptides covering 60.4% of sequence.
  
 0.883
nrdA
Ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 
 0.877
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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