Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (333 aa)    
Predicted Functional Partners:
trmA
SAM-dependent methyltransferases; Related to tRNA (uracil-5-)-methyltransferase; COG2265; expression validated by proteogenomic mapping: 5 unique peptides covering 17.9% of sequence; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
    0.813
manB-2
Phosphomannomutase; COG1109; expression validated by proteogenomic mapping: 40 unique peptides covering 63.4% of sequence.
 
    0.701
MMOB5000
Putative glucose/sucrose specific PTS system IIB component; Expression validated by proteogenomic mapping: 4 unique peptides covering 27.9% of sequence.
       0.626
MMOB5030
Expressed protein; Expression validated by proteogenomic mapping: 22 unique peptides covering 71.9% of sequence.
     
 0.625
gapA
Glyceraldehyde 3-phosphate dehydrogenase; COG0057; expression validated by proteogenomic mapping: 74 unique peptides covering 96.5% of sequence; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
      
 0.623
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
 
 0.589
pheT
phenylalanyl-tRNA synthetase beta chain; COG0072; expression validated by proteogenomic mapping: 17 unique peptides covering 31.3% of sequence; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.589
leuS
leucyl-tRNA synthetase; COG0495; expression validated by proteogenomic mapping: 18 unique peptides covering 37.5% of sequence.
  
 
 0.570
metS
methionyl-tRNA synthetase; COG0143; expression validated by proteogenomic mapping: 11 unique peptides covering 30.3% of sequence.
  
 
 0.560
asnS
asparaginyl-tRNA synthetase; COG0017; expression validated by proteogenomic mapping: 34 unique peptides covering 60.4% of sequence.
  
  
 0.549
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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