STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsHCell division protein ftsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family. (707 aa)    
Predicted Functional Partners:
rplO
50S ribosomal protein l15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.955
rplS
50S ribosomal protein l19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.951
rpmA
50S ribosomal protein l27; COG0211; expression validated by proteogenomic mapping: 9 unique peptides covering 57.6% of sequence; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.946
rplQ
50S ribosomal protein l17; COG0203; expression validated by proteogenomic mapping: 8 unique peptides covering 47.5% of sequence.
  
 
 0.942
rplM
50S ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.939
rpmJ
50S ribosomal protein l36; COG0257; expression not validated; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.938
rpsI
30S ribosomal protein s9; COG0103; expression validated by proteogenomic mapping: 12 unique peptides covering 46.9% of sequence; Belongs to the universal ribosomal protein uS9 family.
  
   0.936
rpsP
30S ribosomal protein s16; COG0228; expression validated by proteogenomic mapping: 7 unique peptides covering 56.3% of sequence; Belongs to the bacterial ribosomal protein bS16 family.
  
   0.936
rplC
50S ribosomal protein l3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.935
rplB
50S ribosomal protein l2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
 
 0.935
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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