Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpsA30S ribosomal protein s1; COG0539; expression validated by proteogenomic mapping: 2 unique peptides covering 16.4% of sequence. (116 aa)    
Predicted Functional Partners:
pgi
Glucose-6-phosphate isomerase; COG0166; expression validated by proteogenomic mapping: 41 unique peptides covering 65.1% of sequence.
       0.793
MMOB5560
N6-adenine-specific methylase; COG0742; expression validated by proteogenomic mapping: 7 unique peptides covering 47.3% of sequence.
       0.554
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.447
MMOB5580
Phosphoprotein ser/thr phosphatase; COG0631; expression validated by proteogenomic mapping: 24 unique peptides covering 63.1% of sequence.
       0.447
sps1-2
Serine/threonine protein kinase; COG0515; expression validated by proteogenomic mapping: 27 unique peptides covering 51.8% of sequence.
       0.447
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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