Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
licAPredicted choline kinase; Involved in LPS biosynthesis; COG0510; expression validated by proteogenomic mapping: 5 unique peptides covering 23.2% of sequence. (246 aa)    
Predicted Functional Partners:
chrA1
Chromate transport protein; COG2059; expression not validated.
  
     0.769
potD
Probable spermidine/putrescine/ABC transporter substrate binding protein; Expression validated by proteogenomic mapping: 25 unique peptides covering 50.1% of sequence.
 
     0.766
MMOB3000
Expressed protein; Expression validated by proteogenomic mapping: 1 unique peptides covering 5.9% of sequence.
  
     0.766
MMOB0520
Probable spermidine/putrescine/ABC transporter substrate binding protein; Expression validated by proteogenomic mapping: 9 unique peptides covering 19.4% of sequence.
 
     0.761
MMOB3845
Rec0.
  
     0.746
MMOB0810
Conserved hypothetical protein; Expression not validated.
  
     0.727
MMOB1310
Expressed protein; COG1214; expression validated by proteogenomic mapping: 5 unique peptides covering 26.1% of sequence.
 
     0.722
MMOB3730
Expressed protein; Expression validated by proteogenomic mapping: 14 unique peptides covering 17.6% of sequence.
 
     0.718
MMOB5220
Putative esterase or lipase protein; COG2755; expression validated by proteogenomic mapping: 8 unique peptides covering 9.9% of sequence.
 
     0.715
MMOB4250
P65 lipoprotein-like protein; Similar to M. hyopneumoniae P65; expression validated by proteogenomic mapping: 27 unique peptides covering 22.9% of sequence.
 
     0.713
Your Current Organism:
Mycoplasma mobile
NCBI taxonomy Id: 267748
Other names: M. mobile 163K, Mycoplasma mobile 163K, Mycoplasma mobile str. 163K, Mycoplasma mobile strain 163K
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