STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADINL_0004TRAP transporter solute receptor, TAXI family precursor. (326 aa)    
Predicted Functional Partners:
ADINL_0003
TRAP-type uncharacterized transport system, fused permease component.
    0.929
ADINL_0255
TRAP-type uncharacterized transport system, fused permease component.
    0.863
ADINL_0384
TRAP-type uncharacterized transport system, fused permease component.
    0.855
ADINL_0002
Universal stress protein family 3.
 
     0.636
ADINL_0001
Universal stress protein family 3.
 
     0.535
ADINL_0005
TRAP transporter solute receptor, TAXI family precursor.
 
    
0.482
Your Current Organism:
Nitrincola lacisaponensis
NCBI taxonomy Id: 267850
Other names: ATCC BAA-920, DSM 16316, N. lacisaponensis, Nitrincola lacisaponensis Dimitriu et al. 2005, strain 4CA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.