Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADINL_0144 | ADINL_0145 | ADINL_0144 | ADINL_0145 | Chromosome (plasmid) partitioning protein ParA. | Chromosome (plasmid) partitioning protein ParB; Belongs to the ParB family. | 0.998 |
ADINL_0144 | ADINL_0667 | ADINL_0144 | ADINL_0667 | Chromosome (plasmid) partitioning protein ParA. | MSHA biogenesis protein MshQ. | 0.546 |
ADINL_0144 | ADINL_1385 | ADINL_0144 | ADINL_1385 | Chromosome (plasmid) partitioning protein ParA. | Outer membrane vitamin B12 receptor BtuB. | 0.828 |
ADINL_0144 | ADINL_1414 | ADINL_0144 | ADINL_1414 | Chromosome (plasmid) partitioning protein ParA. | Hypothetical protein. | 0.546 |
ADINL_0144 | ADINL_2530 | ADINL_0144 | ADINL_2530 | Chromosome (plasmid) partitioning protein ParA. | Cell division protein FtsK. | 0.661 |
ADINL_0144 | ADINL_2878 | ADINL_0144 | ADINL_2878 | Chromosome (plasmid) partitioning protein ParA. | Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis. | 0.548 |
ADINL_0144 | ADINL_2882 | ADINL_0144 | ADINL_2882 | Chromosome (plasmid) partitioning protein ParA. | Chromosomal replication initiator protein DnaA; Belongs to the DnaA family. HdA subfamily. | 0.596 |
ADINL_0144 | dnaA | ADINL_0144 | ADINL_0088 | Chromosome (plasmid) partitioning protein ParA. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.700 |
ADINL_0144 | mnmG | ADINL_0144 | ADINL_0142 | Chromosome (plasmid) partitioning protein ParA. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.814 |
ADINL_0144 | rsmG | ADINL_0144 | ADINL_0143 | Chromosome (plasmid) partitioning protein ParA. | rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.940 |
ADINL_0145 | ADINL_0144 | ADINL_0145 | ADINL_0144 | Chromosome (plasmid) partitioning protein ParB; Belongs to the ParB family. | Chromosome (plasmid) partitioning protein ParA. | 0.998 |
ADINL_0145 | ADINL_2530 | ADINL_0145 | ADINL_2530 | Chromosome (plasmid) partitioning protein ParB; Belongs to the ParB family. | Cell division protein FtsK. | 0.835 |
ADINL_0145 | dnaA | ADINL_0145 | ADINL_0088 | Chromosome (plasmid) partitioning protein ParB; Belongs to the ParB family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.678 |
ADINL_0145 | mnmG | ADINL_0145 | ADINL_0142 | Chromosome (plasmid) partitioning protein ParB; Belongs to the ParB family. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.848 |
ADINL_0145 | rsmG | ADINL_0145 | ADINL_0143 | Chromosome (plasmid) partitioning protein ParB; Belongs to the ParB family. | rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.954 |
ADINL_0667 | ADINL_0144 | ADINL_0667 | ADINL_0144 | MSHA biogenesis protein MshQ. | Chromosome (plasmid) partitioning protein ParA. | 0.546 |
ADINL_0667 | ADINL_1385 | ADINL_0667 | ADINL_1385 | MSHA biogenesis protein MshQ. | Outer membrane vitamin B12 receptor BtuB. | 0.578 |
ADINL_0667 | ADINL_2530 | ADINL_0667 | ADINL_2530 | MSHA biogenesis protein MshQ. | Cell division protein FtsK. | 0.870 |
ADINL_1385 | ADINL_0144 | ADINL_1385 | ADINL_0144 | Outer membrane vitamin B12 receptor BtuB. | Chromosome (plasmid) partitioning protein ParA. | 0.828 |
ADINL_1385 | ADINL_0667 | ADINL_1385 | ADINL_0667 | Outer membrane vitamin B12 receptor BtuB. | MSHA biogenesis protein MshQ. | 0.578 |
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