STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADINL_0528Outer membrane protein ImpK/VasF, OmpA/MotB domain. (432 aa)    
Predicted Functional Partners:
ADINL_0526
Type VI secretion lipoprotein/VasD.
 
  
 0.995
ADINL_0527
Uncharacterized protein ImpJ/VasE.
  
 0.994
ADINL_0535
Uncharacterized protein ImpB.
 
  
 0.994
ADINL_0536
Uncharacterized protein ImpC.
 
  
 0.994
ADINL_0537
Uncharacterized protein ImpC.
 
  
 0.994
ADINL_0530
Protein phosphatase ImpM.
 
  
 0.993
ADINL_0540
Protein ImpG/VasA.
 
  
 0.991
ADINL_0529
IcmF-related protein.
 
 
 0.990
ADINL_0538
Protein of avirulence locus ImpE.
 
  
 0.990
ADINL_0546
VgrG protein.
 
  
 0.982
Your Current Organism:
Nitrincola lacisaponensis
NCBI taxonomy Id: 267850
Other names: ATCC BAA-920, DSM 16316, N. lacisaponensis, Nitrincola lacisaponensis Dimitriu et al. 2005, strain 4CA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.