STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADINL_1237Hypothetical protein. (613 aa)    
Predicted Functional Partners:
ADINL_1236
Methyl-accepting chemotaxis protein.
 
     0.905
ADINL_1235
Type III restriction-modification system methylation subunit.
 
    0.872
ADINL_1238
DEAD/DEAH box helicase-like protein.
 
     0.868
ADINL_1234
Hypothetical protein; Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins.
 
     0.803
ADINL_1233
Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal.
 
     0.706
ADINL_1239
Plasmid stability protein.
       0.555
rapA
RNA polymerase associated protein RapA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
   
   0.461
ADINL_1823
ATP-dependent DNA helicase recG.
  
    0.450
ADINL_0186
ATP-dependent RNA helicase YejH.
 
     0.433
ADINL_1339
Hypothetical protein.
  
    0.429
Your Current Organism:
Nitrincola lacisaponensis
NCBI taxonomy Id: 267850
Other names: ATCC BAA-920, DSM 16316, N. lacisaponensis, Nitrincola lacisaponensis Dimitriu et al. 2005, strain 4CA
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