STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADINL_1922Protein containing domains DUF404, DUF407, DUF403. (868 aa)    
Predicted Functional Partners:
ADINL_1921
Large protein containing transglutaminase-like domain.
  
 0.977
ADINL_1923
Protein containing transglutaminase-like domain, putative cysteine protease.
 
  
 0.958
ADINL_1918
Hypothetical protein.
 
  
 0.949
ADINL_1741
Glutamate synthase [NADPH] large chain.
    
  0.927
ADINL_1919
Protein containing domains DUF404, DUF407.
 
  
0.834
ADINL_1924
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.588
ADINL_0641
Transglutaminase-like enzyme, putative cysteine protease.
  
  
 0.517
ADINL_2250
Hypothetical protein.
  
  
 0.517
ADINL_1641
Gamma-glutamyltranspeptidase.
    
  0.511
ADINL_2304
Membrane alanine aminopeptidase N.
    
  0.459
Your Current Organism:
Nitrincola lacisaponensis
NCBI taxonomy Id: 267850
Other names: ATCC BAA-920, DSM 16316, N. lacisaponensis, Nitrincola lacisaponensis Dimitriu et al. 2005, strain 4CA
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