STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADINL_2896Transcriptional regulator RutR of pyrimidine catabolism (TetR family). (217 aa)    
Predicted Functional Partners:
ADINL_2898
Dihydropyrimidine dehydrogenase [NADP+].
 
     0.728
ADINL_2897
Pyridine nucleotide-disulfide oxidoreductase associated with reductive pyrimidine catabolism.
 
   
 0.619
ADINL_0755
Membrane protein related to purine degradation.
 
     0.611
ADINL_2888
Pyrimidine ABC transporter, substrate-binding component.
 
     0.610
ADINL_2892
Dihydropyrimidinase.
  
     0.546
ADINL_2890
Pyrimidine ABC transporter, transmembrane component 1.
  
     0.496
ADINL_2889
Pyrimidine ABC transporter, transmembrane component 2.
  
     0.456
ADINL_2165
Two-component response regulator.
    
 
 0.444
ADINL_2145
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
    
 
 0.438
Your Current Organism:
Nitrincola lacisaponensis
NCBI taxonomy Id: 267850
Other names: ATCC BAA-920, DSM 16316, N. lacisaponensis, Nitrincola lacisaponensis Dimitriu et al. 2005, strain 4CA
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