ADINL_3010 protein (Nitrincola lacisaponensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ADINL_3010

Polyhydroxyalkanoic acid synthase. (578 aa)

Predicted Functional Partners:

ADINL_1412

0.892

ADINL_1996

0.889

ADINL_1014

0.800

ADINL_3044

0.793

ADINL_0631

0.776

ADINL_0443

0.666

ADINL_2570

0.636

ADINL_3045

0.616

ADINL_1257

0.573

ADINL_0272

0.544

Your Current Organism:

Nitrincola lacisaponensis

NCBI taxonomy Id: 267850
Other names: ATCC BAA-920, DSM 16316, N. lacisaponensis, Nitrincola lacisaponensis Dimitriu et al. 2005, strain 4CA

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ADINL_0272	ADINL_0443	D-(-)-3-hydroxybutyrate oligomer hydrolase.	Ferredoxin reductase.	0.464
ADINL_0272	ADINL_1257	D-(-)-3-hydroxybutyrate oligomer hydrolase.	D-beta-hydroxybutyrate dehydrogenase.	0.434
ADINL_0272	ADINL_1996	D-(-)-3-hydroxybutyrate oligomer hydrolase.	Phosphate acetyltransferase.	0.717
ADINL_0272	ADINL_2570	D-(-)-3-hydroxybutyrate oligomer hydrolase.	Ferredoxin reductase.	0.475
ADINL_0272	ADINL_3010	D-(-)-3-hydroxybutyrate oligomer hydrolase.	Polyhydroxyalkanoic acid synthase.	0.544
ADINL_0443	ADINL_0272	Ferredoxin reductase.	D-(-)-3-hydroxybutyrate oligomer hydrolase.	0.464
ADINL_0443	ADINL_1257	Ferredoxin reductase.	D-beta-hydroxybutyrate dehydrogenase.	0.619
ADINL_0443	ADINL_1412	Ferredoxin reductase.	Acetoacetyl-CoA reductase.	0.499
ADINL_0443	ADINL_3010	Ferredoxin reductase.	Polyhydroxyalkanoic acid synthase.	0.666
ADINL_0443	ADINL_3044	Ferredoxin reductase.	PhbF.	0.416
ADINL_0443	ADINL_3045	Ferredoxin reductase.	Polyhydroxyalkanoic acid synthase.	0.466
ADINL_0631	ADINL_1014	3-hydroxybutyryl-CoA dehydratase.	Enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.972
ADINL_0631	ADINL_1257	3-hydroxybutyryl-CoA dehydratase.	D-beta-hydroxybutyrate dehydrogenase.	0.652
ADINL_0631	ADINL_1412	3-hydroxybutyryl-CoA dehydratase.	Acetoacetyl-CoA reductase.	0.727
ADINL_0631	ADINL_1996	3-hydroxybutyryl-CoA dehydratase.	Phosphate acetyltransferase.	0.954
ADINL_0631	ADINL_3010	3-hydroxybutyryl-CoA dehydratase.	Polyhydroxyalkanoic acid synthase.	0.776
ADINL_0631	ADINL_3045	3-hydroxybutyryl-CoA dehydratase.	Polyhydroxyalkanoic acid synthase.	0.774
ADINL_1014	ADINL_0631	Enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	3-hydroxybutyryl-CoA dehydratase.	0.972
ADINL_1014	ADINL_1257	Enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	D-beta-hydroxybutyrate dehydrogenase.	0.773
ADINL_1014	ADINL_1412	Enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	Acetoacetyl-CoA reductase.	0.773