Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGE20972.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (55 aa)    
Predicted Functional Partners:
KGE20971.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.696
KGE20969.1
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.572
KGE19348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.548
KGE20968.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.538
KGE20970.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
KGE20973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
Your Current Organism:
Paenibacillus wynnii
NCBI taxonomy Id: 268407
Other names: CIP 108306, DSM 18334, LMG 22176, LMG:22176, P. wynnii, Paenibacillus wynnii Rodriguez-Diaz et al. 2005
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