Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGE18922.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (708 aa)    
Predicted Functional Partners:
KGE20293.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.849
KGE20214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.777
KGE16653.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.777
KGE18794.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.776
KGE17274.1
Nitrate/nitrite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.738
KGE17355.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
KGE18494.1
HD family phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.686
KGE19976.1
HD family phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.683
KGE16551.1
HD family phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
KGE20239.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
Your Current Organism:
Paenibacillus wynnii
NCBI taxonomy Id: 268407
Other names: CIP 108306, DSM 18334, LMG 22176, LMG:22176, P. wynnii, Paenibacillus wynnii Rodriguez-Diaz et al. 2005
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