STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T10_8227DDE_Tnp_1_7 domain-containing protein. (82 aa)    
Predicted Functional Partners:
T10_4923
DDE_Tnp_1_7 domain-containing protein.
  
   0.533
T10_12983
DDE_Tnp_1_7 domain-containing protein.
  
   0.525
Ap2b1
AP complex subunit beta.
    
  0.502
PGBD4-13
PiggyBac transposable element-derived protein 4.
  
   0.499
T10_1910
DDE_Tnp_1_7 domain-containing protein.
  
     0.495
T10_8071
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family.
    
 0.490
T10_4857
Uncharacterized protein.
  
 
   0.474
PGBD4-12
PiggyBac transposable element-derived protein 4.
  
   0.470
PGBD4-14
PiggyBac transposable element-derived protein 4.
  
   0.466
AP1G1
AP-1 complex subunit gamma-1.
    
  0.453
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.