STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
unc-98Procollagen-lysine,2-oxoglutarate 5-dioxygenase. (1049 aa)    
Predicted Functional Partners:
colgalt1
Procollagen galactosyltransferase 1.
   
0.917
PRDM5
PR domain zinc finger protein 5.
     
 0.858
SUV39H1
Histone-lysine N-methyltransferase SUV39H1.
    
 0.830
T10_5812
Uncharacterized protein.
    
 0.820
E(z)
Histone-lysine N-methyltransferase E(Z).
   
 0.814
setd8-b
N-lysine methyltransferase SETD8-B.
    
 0.810
Kmt2b
Histone-lysine N-methyltransferase 2B.
    
 0.810
lin-59
Putative histone-lysine N-methyltransferase lin-59.
    
 0.700
ash1
Histone-lysine N-methyltransferase ash1.
    
 0.650
ncapg
Putative cuticle collagen.
   
 0.617
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.