STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hil-4Histone H1.4. (220 aa)    
Predicted Functional Partners:
RPA2
Replication protein A 32 kDa subunit.
    
 0.919
sas6
Spindle assembly abnormal protein 6-like protein.
    
 0.919
T10_10654
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.881
T10_11321
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.881
H2B-VII
Histone H2B; Belongs to the histone H2B family.
   
 
 0.832
H4-I
Histone H4.
   
 0.804
htz-1
Histone H2A.V; Belongs to the histone H2A family.
   
 0.799
hist2h2l
Histone H2B; Belongs to the histone H2B family.
   
 
 0.678
H2BFS
Histone H2B type F-S; Belongs to the histone H2B family.
   
 
 0.678
Cdk1
Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.
   
 
 0.677
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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