STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kat8Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (454 aa)    
Predicted Functional Partners:
MTERFD1
DNA helicase; Belongs to the RuvB family.
   
 0.875
EPC1
Enhancer of polycomb-like protein 1.
    
 0.850
Trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.828
meaf6
Chromatin modification-related protein MEAF6.
    
 0.826
BRPF1
Peregrin.
    
 0.814
ruvbl2
RuvB-like helicase; Belongs to the RuvB family.
    
 0.791
pfn-1
Chromatin modification-related protein YNG2.
    
 0.755
Ing1
Inhibitor of growth protein 1.
    
 0.755
T10_10654
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.754
T10_11321
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.754
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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