STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a40Solute carrier family 25 member 40; Belongs to the mitochondrial carrier (TC 2.A.29) family. (374 aa)    
Predicted Functional Partners:
Txnl1
Thioredoxin-like protein 1.
   
    0.604
isca1
Iron-sulfur cluster assembly 1-like protein, mitochondrial.
   
  
 0.469
fyn
Tyrosine-protein kinase.
     
 0.429
T10_11164
SEFIR domain-containing protein.
     
 0.429
aldh4a1
Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.
   
 
  0.424
Sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
      
 0.422
Abcb7
ATP-binding cassette sub-family B member 7, mitochondrial.
      
 0.418
GCAT
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial.
   
  
 0.412
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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