STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chid1Chitinase domain-containing protein 1; Belongs to the glycosyl hydrolase 18 family. (382 aa)    
Predicted Functional Partners:
REC8
Meiotic recombination protein REC8-like protein.
    
 
 0.651
T10_2256
UPF0468 protein C16orf80.
    
 
 0.572
T10_1826
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
   0.572
mig-10
Abnormal cell migration protein 10.
    
   0.572
COPE
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
   
    0.518
GRM5
Metabotropic glutamate receptor 5.
    
 
 0.461
GRM3
Metabotropic glutamate receptor 3.
    
 
 0.461
GRM3-2
Metabotropic glutamate receptor 3.
    
 
 0.461
GRM7
Metabotropic glutamate receptor 7; Belongs to the G-protein coupled receptor 3 family.
    
 
 0.457
YNK1
Nucleoside diphosphate kinase.
    
   0.449
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.