STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hda-4Histone deacetylase 4. (806 aa)    
Predicted Functional Partners:
HSF3
Heat shock factor protein 3.
    
 0.973
H2B-VII
Histone H2B; Belongs to the histone H2B family.
    
 0.921
htz-1
Histone H2A.V; Belongs to the histone H2A family.
   
 0.873
gei-8
Gex-3-interacting protein 8.
    
 0.861
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.841
Ranbp2
E3 SUMO-protein ligase RanBP2.
   
 0.841
MBD3
Methyl-CpG-binding domain protein 3.
    
 0.817
UBA52
Ubiquitin-60S ribosomal protein L40.
    
  0.816
Nup155
Nuclear pore complex protein.
   
 0.814
CCND2
G1/S-specific cyclin-D2; Belongs to the cyclin family.
   
 0.805
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.