STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cyth3Cytohesin-3; Belongs to the peptidase S1 family. (631 aa)    
Predicted Functional Partners:
IQSEC1
IQ motif and SEC7 domain-containing protein 1.
    
0.935
PSD3
PH and SEC7 domain-containing protein 3.
     
0.843
age-1
Phosphatidylinositol 3-kinase age-1; Belongs to the PI3/PI4-kinase family.
   
 0.806
GBF1
Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.
     
0.790
PIK3C2B
Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha; Belongs to the PI3/PI4-kinase family.
   
 
  0.785
ARFGEF1
Brefeldin A-inhibited guanine nucleotide-exchange protein 1.
     
0.779
arf-1.2
ADP-ribosylation factor 1-like 2.
    
 0.752
Arl5b
ADP-ribosylation factor-like protein 5B; Belongs to the small GTPase superfamily. Arf family.
    
 0.752
ARF4
ADP-ribosylation factor 4; Belongs to the small GTPase superfamily. Arf family.
    
 0.752
Frmd4a
FERM domain-containing protein 4A.
    
 
 0.679
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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