STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCLRE1ADNA cross-link repair 1A protein. (517 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
 0.875
Cpsf1
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.873
Xrcc5
X-ray repair cross-complementing protein 5.
    
 0.853
Papolg
Poly(A) polymerase gamma.
    
 0.833
Fip1l1
Pre-mRNA 3'-end-processing factor FIP1.
    
 0.830
CSTF1
Cleavage stimulation factor subunit 1.
   
 0.816
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
    
 0.813
DNL4
DNA ligase.
   
 0.811
SYMPK
Symplekin.
   
 0.809
Sympk
Symplekin.
   
 0.809
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.