STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prdm13PR domain zinc finger protein 13. (204 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.738
unc-89-2
Muscle M-line assembly protein unc-89.
    
 0.729
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.729
TONSL
Tonsoku-like protein.
   
 0.682
rpsa
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
  0.588
lamtor2
Ragulator complex protein LAMTOR2.
    
 0.585
mrps-14
Putative 40S ribosomal protein S14, mitochondrial.
    
  0.583
GTF3C5-2
General transcription factor 3C polypeptide 5.
    
 0.583
GTF3C3
General transcription factor 3C polypeptide 3.
    
 0.583
T10_2045
Putative myosin regulatory light chain.
    
  0.578
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.