STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pbdc1Protein PBDC1. (148 aa)    
Predicted Functional Partners:
rpb-8
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC3.
   
   0.552
Pdcd5
Programmed cell death protein 5.
   
    0.541
EF1
Elongation factor 1-alpha.
    
   0.511
T10_9688
Elongation factor 1-alpha.
    
   0.511
GSPT2
Eukaryotic peptide chain release factor GTP-binding subunit ERF3B.
    
   0.470
Bckdhb
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial.
      
 0.459
RPL37A
rRNA-processing protein FCF1-like protein.
   
    0.451
T10_10903
Putative H/ACA ribonucleoprotein complex subunit 2-like protein.
   
    0.434
nop10
H/ACA ribonucleoprotein complex subunit 3.
   
    0.420
Vbp1
Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.
   
    0.402
Your Current Organism:
Trichinella papuae
NCBI taxonomy Id: 268474
Other names: T. papuae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.