STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T11_17177Uncharacterized protein. (88 aa)    
Predicted Functional Partners:
Rpf2
Ribosome production factor 2-like protein.
   
   0.680
TRIP4
RNA-binding protein 28.
   
   0.663
mki67ipl
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
   
   0.661
brix1
Ribosome biogenesis protein BRX1-like protein.
   
   0.648
T11_7584
Pumilio domain-containing protein-like protein.
   
 
 0.631
C18A3.3
Putative rRNA-processing protein EBP2-like protein.
   
   0.629
dbe
KRR1 small subunit processome component-like protein.
   
   0.617
Ftsj3
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 
 0.602
F44G4.1
Brix domain-containing protein F44G4.1.
   
   0.600
C47E12.7
Ribosomal RNA processing protein 1-like protein.
   
 
 0.593
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.