STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SrasCAAX prenyl protease 2. (271 aa)    
Predicted Functional Partners:
ZMPSTE24
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
    
 0.727
Fntb
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
 0.646
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
   
 0.626
FNTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
     
 0.587
USP36
Ubiquitin carboxyl-terminal hydrolase.
     
 0.546
K-RAS
GTPase-like protein.
    
 0.426
PGBD4-3
PiggyBac transposable element-derived protein 4.
    
 0.425
T11_15453
Uncharacterized protein.
    
 0.425
T11_9911
DDE_Tnp_1_7 domain-containing protein.
    
 0.425
T11_16299
Uncharacterized protein.
    
 0.425
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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