pyroxd1 protein (Trichinella zimbabwensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pyroxd1

Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1. (446 aa)

Predicted Functional Partners:

FDX1L

0.807

T11_9789

0.787

mel-32

0.720

Gldc

0.691

XPNPEP3

0.687

Ethe1

0.681

TXNRD1

0.641

DLD

0.641

TXNRD2

0.641

TXNRD1-2

0.641

Your Current Organism:

Trichinella zimbabwensis

NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLD	Gldc	A0A0V1HFD2	A0A0V1HR24	Dihydrolipoyl dehydrogenase.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.920
DLD	T11_9789	A0A0V1HFD2	A0A0V1H640	Dihydrolipoyl dehydrogenase.	Putative sulfite oxidase, mitochondrial.	0.570
DLD	mel-32	A0A0V1HFD2	A0A0V1H5I9	Dihydrolipoyl dehydrogenase.	Serine hydroxymethyltransferase.	0.944
DLD	pyroxd1	A0A0V1HFD2	A0A0V1GV42	Dihydrolipoyl dehydrogenase.	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1.	0.641
Ethe1	FDX1L	A0A0V1HUB4	A0A0V1H212	Persulfide dioxygenase ETHE1, mitochondrial.	Adrenodoxin-like protein, mitochondrial.	0.886
Ethe1	T11_9789	A0A0V1HUB4	A0A0V1H640	Persulfide dioxygenase ETHE1, mitochondrial.	Putative sulfite oxidase, mitochondrial.	0.962
Ethe1	pyroxd1	A0A0V1HUB4	A0A0V1GV42	Persulfide dioxygenase ETHE1, mitochondrial.	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1.	0.681
FDX1L	Ethe1	A0A0V1H212	A0A0V1HUB4	Adrenodoxin-like protein, mitochondrial.	Persulfide dioxygenase ETHE1, mitochondrial.	0.886
FDX1L	T11_9789	A0A0V1H212	A0A0V1H640	Adrenodoxin-like protein, mitochondrial.	Putative sulfite oxidase, mitochondrial.	0.898
FDX1L	XPNPEP3	A0A0V1H212	A0A0V1I322	Adrenodoxin-like protein, mitochondrial.	Putative Xaa-Pro aminopeptidase 3.	0.412
FDX1L	mel-32	A0A0V1H212	A0A0V1H5I9	Adrenodoxin-like protein, mitochondrial.	Serine hydroxymethyltransferase.	0.528
FDX1L	pyroxd1	A0A0V1H212	A0A0V1GV42	Adrenodoxin-like protein, mitochondrial.	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1.	0.807
Gldc	DLD	A0A0V1HR24	A0A0V1HFD2	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Dihydrolipoyl dehydrogenase.	0.920
Gldc	TXNRD1	A0A0V1HR24	A0A0V1GD75	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Thioredoxin reductase 1, cytoplasmic.	0.739
Gldc	TXNRD1-2	A0A0V1HR24	A0A0V1HZE5	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Thioredoxin reductase 1, cytoplasmic; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.739
Gldc	TXNRD2	A0A0V1HR24	A0A0V1HVR6	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Thioredoxin reductase 2, mitochondrial.	0.739
Gldc	XPNPEP3	A0A0V1HR24	A0A0V1I322	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Putative Xaa-Pro aminopeptidase 3.	0.480
Gldc	mel-32	A0A0V1HR24	A0A0V1H5I9	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Serine hydroxymethyltransferase.	0.980
Gldc	pyroxd1	A0A0V1HR24	A0A0V1GV42	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1.	0.691
T11_9789	DLD	A0A0V1H640	A0A0V1HFD2	Putative sulfite oxidase, mitochondrial.	Dihydrolipoyl dehydrogenase.	0.570