STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T01C8.5Aspartate aminotransferase. (1787 aa)    
Predicted Functional Partners:
T11_13950
RING-type domain-containing protein.
   
 0.964
got2
Aspartate aminotransferase.
  
0.948
Gdh
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.946
ldh-1
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
   
 0.933
gpt2
Alanine aminotransferase 2.
   
 0.927
IDH2
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
   
 0.925
T11_216
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.913
aldh4a1
Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.
   
 0.911
fum-1
Putative fumarate hydratase, mitochondrial.
   
 0.909
hpd
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.908
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.