STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T11_13675Uncharacterized protein. (79 aa)    
Predicted Functional Partners:
inf-1
Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family.
   
 0.740
1a-2
Replicase polyprotein 1a.
    
 0.693
PABPC1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.693
EIF4G3
Eukaryotic translation initiation factor 4 gamma 3.
   
 0.673
EIF4G3-2
Eukaryotic translation initiation factor 4 gamma 3.
   
 0.673
PAIP1
Polyadenylate-binding protein-interacting protein 1.
   
 0.673
Ranbp2
E3 SUMO-protein ligase RanBP2.
   
 
 0.666
Ranbp1
Ran-specific GTPase-activating protein.
   
 
 0.666
Eif4a3
Eukaryotic initiation factor 4A-III.
   
 0.657
fkbp1a
Peptidylprolyl isomerase.
   
 0.632
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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