STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbc1d15TBC1 domain family member 15. (585 aa)    
Predicted Functional Partners:
FIS1
Mitochondrial fission 1 protein.
    
 0.948
Rab7a
Ras-related protein Rab-7a.
    
 0.936
lgg-1
Protein lgg-1.
   
 0.868
Fis1
Mitochondrial fission 1 protein.
    
 0.793
Map1lc3b
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.746
Rab8a
Ras-related protein Rab-8A.
    
 0.643
T11_9382
Uncharacterized protein.
    
 0.643
RASEF
Ras and EF-hand domain-containing-like protein.
    
 0.643
RAB1A
Ras-related protein Rab-1A.
     
 0.587
Rab4b
Ras-related protein Rab-4B.
    
 0.582
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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