STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Irx6Iroquois-class homeodomain protein IRX-6. (594 aa)    
Predicted Functional Partners:
exd
Homeobox protein extradenticle.
    
0.898
SRF
Serum response factor.
   
 
 0.758
Abd-B
Homeobox protein abdominal-B.
    
 
 0.585
Hivep3
Transcription factor HIVEP3.
    
 
 0.576
nr2f1a
Nuclear receptor subfamily 2 group F member 1-A.
    
 
 0.560
YAP1
Yorkie-like protein.
    
 0.551
dll1
Homeobox protein DLL-1.
    
 
 0.530
DIAPH2
Protein diaphanous-like protein 2.
      
 0.527
SMAD4
Mothers against decapentaplegic homolog.
    
 0.526
SMAD4-2
Mothers against decapentaplegic-like protein 4.
    
 0.526
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.