mrpl-49 protein (Trichinella zimbabwensis) - STRING interaction network

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Score

mrpl-49

Putative small nuclear ribonucleoprotein E. (469 aa)

Predicted Functional Partners:

snr-7

0.995

SmF

0.994

Snrpa1

0.979

T11_14688

0.976

T11_412

0.974

Snrpb2

0.974

Polr2j

0.974

T11_5807

0.973

Ncbp2

0.973

Lsm6

0.967

Your Current Organism:

Trichinella zimbabwensis

NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lsm6	Ncbp2	A0A0V1HMG6	A0A0V1I522	U6 snRNA-associated Sm-like protein LSm6.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	0.649
Lsm6	Polr2j	A0A0V1HMG6	A0A0V1I645	U6 snRNA-associated Sm-like protein LSm6.	Homeobox protein cut-like.	0.973
Lsm6	SmF	A0A0V1HMG6	A0A0V1HR78	U6 snRNA-associated Sm-like protein LSm6.	Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
Lsm6	Snrpa1	A0A0V1HMG6	A0A0V1HYA5	U6 snRNA-associated Sm-like protein LSm6.	U2 small nuclear ribonucleoprotein A.	0.996
Lsm6	Snrpb2	A0A0V1HMG6	A0A0V1HZW1	U6 snRNA-associated Sm-like protein LSm6.	U2 small nuclear ribonucleoprotein B.	0.938
Lsm6	T11_14688	A0A0V1HMG6	A0A0V1HG94	U6 snRNA-associated Sm-like protein LSm6.	PHD finger-like domain-containing protein 5B.	0.958
Lsm6	T11_412	A0A0V1HMG6	A0A0V1H0T2	U6 snRNA-associated Sm-like protein LSm6.	Uncharacterized protein.	0.999
Lsm6	T11_5807	A0A0V1HMG6	A0A0V1HCZ5	U6 snRNA-associated Sm-like protein LSm6.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.943
Lsm6	mrpl-49	A0A0V1HMG6	A0A0V1H4X3	U6 snRNA-associated Sm-like protein LSm6.	Putative small nuclear ribonucleoprotein E.	0.967
Lsm6	snr-7	A0A0V1HMG6	A0A0V1HQP4	U6 snRNA-associated Sm-like protein LSm6.	Small nuclear ribonucleoprotein G.	0.991
Ncbp2	Lsm6	A0A0V1I522	A0A0V1HMG6	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	U6 snRNA-associated Sm-like protein LSm6.	0.649
Ncbp2	Polr2j	A0A0V1I522	A0A0V1I645	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	Homeobox protein cut-like.	0.954
Ncbp2	SmF	A0A0V1I522	A0A0V1HR78	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
Ncbp2	Snrpa1	A0A0V1I522	A0A0V1HYA5	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	U2 small nuclear ribonucleoprotein A.	0.996
Ncbp2	Snrpb2	A0A0V1I522	A0A0V1HZW1	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	U2 small nuclear ribonucleoprotein B.	0.995
Ncbp2	T11_14688	A0A0V1I522	A0A0V1HG94	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	PHD finger-like domain-containing protein 5B.	0.535
Ncbp2	T11_412	A0A0V1I522	A0A0V1H0T2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	Uncharacterized protein.	0.596
Ncbp2	T11_5807	A0A0V1I522	A0A0V1HCZ5	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.534
Ncbp2	mrpl-49	A0A0V1I522	A0A0V1H4X3	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	Putative small nuclear ribonucleoprotein E.	0.973
Ncbp2	snr-7	A0A0V1I522	A0A0V1HQP4	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.	Small nuclear ribonucleoprotein G.	0.999