STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Exosc4Exosome complex component RRP41. (477 aa)    
Predicted Functional Partners:
Exosc10
Exosome component 10.
   
 0.999
EXOSC7
Exosome complex component RRP42.
  
 0.999
EXOSC9
Exosome complex component RRP45.
   
 0.999
EXOSC8
Exosome complex component RRP43.
   
 0.999
Skiv2l2
Superkiller viralicidic activity 2-like 2.
   
 0.995
c1d
Nuclear nucleic acid-binding protein C1D.
   
 0.991
DIS3
Exosome complex exonuclease RRP44; Belongs to the RNR ribonuclease family.
   
 0.982
dis3l
DIS3-like exonuclease 1; Belongs to the RNR ribonuclease family.
   
 0.982
Cnot4
CCR4-NOT transcription complex subunit 4.
    
 
 0.973
SKIV2L
Helicase SKI2W.
   
 0.946
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.