STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxtXylosyltransferase oxt. (733 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
   
 0.999
Alg13
Intersectin-2.
    
 0.950
Dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
   
 0.936
B4galt7
Beta-1,4-galactosyltransferase 7.
     
 0.931
Dhx58
Putative ATP-dependent RNA helicase DHX58.
    
 0.821
POP4
Ribonuclease P protein subunit p29.
   
 0.820
ERCC1
DNA excision repair protein ERCC-1.
    
 0.820
POP1
Ribonucleases P/MRP protein subunit POP1.
    
 0.816
RPP30-2
Ribonuclease P protein subunit p30.
    
 0.815
FANCL
E3 ubiquitin-protein ligase FANCL.
    
 0.810
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.