STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg3Autophagy-related protein 3. (316 aa)    
Predicted Functional Partners:
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.999
ATG7
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.999
lgg-1
Protein lgg-1.
  
 0.998
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.996
ATG16L1
Autophagy-related protein 16-1.
   
 0.994
Map1lc3b
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.976
ULK3
Serine/threonine-protein kinase ULK3.
   
 
 0.932
ULK3-2
Serine/threonine-protein kinase ULK3; Belongs to the protein kinase superfamily.
   
 
 0.932
Atg6
Beclin-1-like protein.
   
 0.892
wipi2
WD repeat domain phosphoinositide-interacting protein 2.
    
 0.880
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.