STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aars-2Alanine--tRNA ligase, cytoplasmic. (978 aa)    
Predicted Functional Partners:
T11_13916
Uncharacterized protein.
   
 0.905
Anapc5
Anaphase-promoting complex subunit 5.
   
 0.901
ANAPC1
Anaphase-promoting complex subunit 1.
    
 0.897
yars
Tyrosine--tRNA ligase.
  
 
 0.896
Eprs
Bifunctional glutamate/proline--tRNA ligase.
  
 
 0.882
Vars
Valine--tRNA ligase.
  
  
 0.858
BUB1
Checkpoint serine/threonine-protein kinase BUB1.
    
 0.833
mrs-1
Methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.832
T11_2338
Glycine--tRNA ligase.
  
 
 0.783
trs-1
Threonine--tRNA ligase, cytoplasmic.
   
 
 0.740
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.