STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NR2E3Photoreceptor-specific nuclear receptor. (491 aa)    
Predicted Functional Partners:
Arntl
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
  
 
 0.663
Clk
Circadian locomoter output cycles protein kaput.
  
 
 0.634
arnt
Aryl hydrocarbon receptor nuclear translocator.
  
 
 0.633
gei-8
Gex-3-interacting protein 8.
    
 0.621
Egfr
Receptor protein-tyrosine kinase.
    
 0.565
vvl
POU domain protein CF1A.
  
 
 0.565
T11_5145
Uncharacterized protein.
    
 0.560
JTB
Nuclear receptor coactivator 2.
    
 0.560
nhr-25
Nuclear hormone receptor family member nhr-25.
    
0.546
FPR2
Peptidylprolyl isomerase.
    
 0.530
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.