STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf39Pre-mRNA-processing factor 39. (758 aa)    
Predicted Functional Partners:
Trnau1ap
tRNA selenocysteine 1-associated protein 1.
   
 
 0.976
CDC5L
Cell division cycle 5-like protein.
   
 
 0.974
JKAMP
RNA-binding protein 25.
   
 
 0.954
Snrpa1
U2 small nuclear ribonucleoprotein A.
    
 
 0.946
LUC7L
Putative RNA-binding protein Luc7-like 1.
   
 
 0.910
Ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.
    
 
 0.905
Prpf40b
Pre-mRNA-processing factor 40-like protein B.
    
 
 0.852
SF3B1
Splicing factor 3B subunit 1.
   
 
 0.846
Cbp80
Nuclear cap-binding protein subunit 1.
    
 
 0.830
SNRNP70
U1 small nuclear ribonucleoprotein 70 kDa.
   
 
 0.822
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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