STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMPD1Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. (625 aa)    
Predicted Functional Partners:
ASAH1
Acid ceramidase; Belongs to the acid ceramidase family.
   
 0.913
T27F6.6
Putative neutral sphingomyelinase.
     
 0.904
sms-1
Phosphatidylcholine:ceramide cholinephosphotransferase 1.
     
 0.889
gba-3
Glucosylceramidase.
   
 
 0.873
ugcg-b
Ceramide glucosyltransferase-B.
     
 0.862
CERS6
Ceramide synthase 6.
     
 0.861
ttm-5
Putative sphingolipid delta(4)-desaturase/C4-hydroxylase.
     
 0.820
Ppap2a
Lipid phosphate phosphohydrolase 1.
     
 0.815
UGT2B14
UDP-glucuronosyltransferase 2B14; Belongs to the UDP-glycosyltransferase family.
     
 0.813
sms-3
Putative phosphatidylcholine:ceramide cholinephosphotransferase 3.
     
 0.813
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.