STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T11_7238Uncharacterized protein. (663 aa)    
Predicted Functional Partners:
lsm-4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.999
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.999
T11_412
Uncharacterized protein.
    
 0.999
LSM7
U6 snRNA-associated Sm-like protein LSm7.
    
 0.999
cgh-1
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
   
 0.999
Lsm6
U6 snRNA-associated Sm-like protein LSm6.
    
  0.999
Cnot7
CCR4-NOT transcription complex subunit 7.
    
 
 0.997
CNOT6
CCR4-NOT transcription complex subunit 6.
    
 
 0.995
CNOT3
CCR4-NOT transcription complex subunit 3.
   
 
 0.990
XRN1
5'-3' exoribonuclease 1.
    
 0.986
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.